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How to authenticate bots using the API

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When Mattermost is installed with GitLab and uses GitLab SSO, I wonder how we could integrate with bots. In my use case, webhooks are no option because the outgoing webhooks are not available for private channels. So I wanted to use a bot that uses the API and therefore should login as a bot user to Mattermost. But that doesn't seem possible when SSO with Gitlab is enabled. Is there something I'm missing?


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